Plant GARDEN
How To ▶︎

JA

EN

TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

Search

By Species By Keywords Genes By Markers By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only) Sequences Other Tools

Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015861405.1_cds_XP_016514955.1_27351
CDS Infomation

[gene=LOC107831686] [db_xref=GeneID:107831686] [protein=probable rhamnogalacturonate lyase B] [protein_id=XP_016514955.1] [location=join(8722..8778,9448..9569,10092..10151,10245..10364,10466..10585,11032..11173,11262..11432,11502..11657,11763..11869,12216..12306,12435..12745,13190..13306,13446..13572,13699..13986)] [gbkey=CDS]
Sequence

ATGATTGTGCCAAAGCATTCACAGATGTCACCTCGAGTTCTTCAGCAACAGGACCAAGTG
GTAATAGATAATGGCGTATTCCAACTCAGATTGACAAATCCAGGAGGGAAAATTATTGGT
ATTCAATATAATGGGATTGACAATCTGCTGGACCTCAACAACCCAATCTTAAATGGAGGA
TTCTGGGACTTAAACTGGAGTGAACCTGGAACTGCTGGAACAAGAGGAAAATTTGATGAG
ATTGAAGGTAATAGTTTTAAAGTTATAGTGGAAAATGAAGAACAGATAGAGCTCTCATTT
ATTAGGACATGGGATCCTTCACTTCAGGGCGAGCATTCCCCGTTAACCATAGACAAAAGG
TTCATAGTACTTCGGGATTCGCCTGGTTTTTACTCTTATGCTATTTATGAACACAAAGAG
GATATGCCGGCATTCAACCTCAATGAAACCAGGATAGCTTTCATGCTCAGCATAGAAAAG
TTTCGGTACATGGTTATGGCAGATGATAGGCAAAGGCTAATGCCCCTCCCTGAAGATCGC
GTACCTCCAAGAGGGAAGGAATTGGCATATCCAGAAGCTGTCCTGCTTGTCGATCCTGTT
GAACCAGAATTTAAAGGAGAAGTTGATGACAAGTACCAATATTCGTGTGAGAACAAAGAT
AACAAAGTCCATGGTTTCATATGCTTAGACCCTCCAGTCGGATTTTGGGAAATAACTCCG
AGCAATGAGTTCAGAACAGGTGGACCTATCAAACAGGATCTTACTTCCCACGTTAATCCA
ACTACTCTGGCTATGTTCGTGAGCACTCATTATGGAGGGCAGGATTTCGTGATTAAATTT
GGATCAGGTGAACCATGGAAGAAAGTTTTTGGTCCTGTTTTTATATATCTCAATTCTGTA
GCAGACAAACACGATACACTTTCCCTTTGGGATGACGCCAAAGAACGGATGCAGAAAGAA
GTTGACTGTTGGCCTTATAGTTTCCCAAGTTCAGAAGATTTTCCAAAGGCGGACCAAAGA
GGTGCCATCCGTGGTAGATTACTAGTCCATGACAGGTATATAAACAAGGAGTATTTATCT
GCAAAGGGTGCTTTTGTGGGGCTAGCTCCACCTGGAGATGCTGGATCATTTCAAAGAGAA
TGCAAGGGCTACCAATTCTGGACAAACTCAGATGATGAAGGCTATTTTACAATCCGAAAT
ATTCGTCCAGGGGACTATAACCTCTATGCTTGGGTACCTGGCTTCATTGGAGATTACAGA
TATGAAAAATCCATAGCAATGGCTGCAGGTTCAAATCATTTAGAGGTTGATGTTGGTGAA
CTTGTGTATGAGCCTCCAAGAAGTGGTCCTACATTGTGGGAAATCGGCATCCCTGATCGT
TCTGCTGCAGAATTCTACATTCCCGACCCTAATCCACAGTATATTAACAAACTCTACGTA
AATCAACCAGTACACAGGTTTAGGCAGTATGGATTATGGGAGAGATATGCAGATTTATAT
CCAAATCAAGATTTGGTTTATACAGTTGGAAGTAGTGACTATAGAAAAGATTGGTTCTAT
GCTCAAGTGACCAGAAAAGTGGGTGATAAGGCATTTGAACCGACAACCTGGCAAATTAAA
TTCAGTTTAGATGGCGTTGACCAAACTGGAAATTACACACTGCGAATTGCACTCTCATCT
TCAACTCAGTCGATATTGGAGGTAAGGGTGAATGAGGCAGAAGCAAATCCACCCCATTTC
TCAAGTGGATTGATTGGAAGTGATAACGCGATTGCCAGGCATGGAATCCACGGGTTATAT
TGGTTGTTTAACGTGGAGGTAGCTGCAGGACAACTCCTTCAAGGAGAGAATATCATATAT
CTCAAACAAGCATGGAGTGTCAGTGCTTTGCATGGGATTATGTACGACTATATTCGTCTG
GAAGCTCCTCCTCTTTCCGCCACACACTTTCAATGGCGGATCCAGAGGAGGTTCTGTGGG
TTCAACTAA

Peptide Sequence

PEP ID

XP_016514955.1
PEP Infomation

PREDICTED: probable rhamnogalacturonate lyase B [Nicotiana tabacum]
Sequence

MIVPKHSQMSPRVLQQQDQVVIDNGVFQLRLTNPGGKIIGIQYNGIDNLLDLNNPILNGG
FWDLNWSEPGTAGTRGKFDEIEGNSFKVIVENEEQIELSFIRTWDPSLQGEHSPLTIDKR
FIVLRDSPGFYSYAIYEHKEDMPAFNLNETRIAFMLSIEKFRYMVMADDRQRLMPLPEDR
VPPRGKELAYPEAVLLVDPVEPEFKGEVDDKYQYSCENKDNKVHGFICLDPPVGFWEITP
SNEFRTGGPIKQDLTSHVNPTTLAMFVSTHYGGQDFVIKFGSGEPWKKVFGPVFIYLNSV
ADKHDTLSLWDDAKERMQKEVDCWPYSFPSSEDFPKADQRGAIRGRLLVHDRYINKEYLS
AKGAFVGLAPPGDAGSFQRECKGYQFWTNSDDEGYFTIRNIRPGDYNLYAWVPGFIGDYR
YEKSIAMAAGSNHLEVDVGELVYEPPRSGPTLWEIGIPDRSAAEFYIPDPNPQYINKLYV
NQPVHRFRQYGLWERYADLYPNQDLVYTVGSSDYRKDWFYAQVTRKVGDKAFEPTTWQIK
FSLDGVDQTGNYTLRIALSSSTQSILEVRVNEAEANPPHFSSGLIGSDNAIARHGIHGLY
WLFNVEVAAGQLLQGENIIYLKQAWSVSALHGIMYDYIRLEAPPLSATHFQWRIQRRFCG
FN

Transcript Sequence

Gene sequence data has not been registered.